Global rice QC 24-SNPs

This SNP set is optimized to detect up to 99.9% of cross contaminations between rice germplasms. It has an average of 10 polymorphic SNPs between accessions from the rice gene bank. It can uniquely distinguish up to 90% of the published 3024 sequenced rice genomes. It is an affordable and effective genotyping platform for seed quality control and assurance. For inquiries, please contact us at gsl@irri.org.

 SNP Provider ID Chr Ref Alt
snpOS0349 1 A G
snpOS0373 1 G A
snpOS0350 2 C T
snpOS0351 2 T C
snpOS0352 2 T C
snpOS0355 4 T G
snpOS0356 4 T C
snpOS0308 5 C A
snpOS0357 5 C T
snpOS0309 6 T C
snpOS0382 6 C G
snpOS0291 7 G A
snpOS0358 7 G A
snpOS0292 8 A G
snpOS0384 8 G A
snpOS0362 9 A G
snpOS0363 10 G T
snpOS0314 11 A G
snpOS0365 11 A G
snpOS0368 11 A T
snpOS0369 11 T G
snpOS0388 11 A G
snpOS0389 11 T C
snpOS0318 12 G C