External service provider II KASP™ SNP genotyping 

GSL offers trait genotyping with over 100 validated * SNP markers for 25 QTLs/genes related to biotic and abiotic stresses, grain quality and yield. These can be run routinely on a high-throughput genotyping platform and is useful for different markers assisted application strategies. Click here for the complete list.

Any combination of 96 sample batches can be run across any combination of these markers with the cost depending on sample and marker number.

   Trait  Number of Markers
 1 Abiotic stress - Anaerobic germination  4
 2 Abiotic stress - Cold - Seedling  5
 3 Abiotic stress - Drought - reproductive  28
 4 Abiotic stress - Heat - Reproductive  1
 5 Abiotic stress - Salinity - Seedling  6
 6 Abiotic stress - Submergence  3
 7 Agronomic traits - Herbicide tolerance  1
 8 Disease - Bacterial leaf blight  10
 9 Disease - Blast  9
 10 Disease - Insect - Brown planthopper  5
 11 Disease - Insect - Gall midge  4
 12 Disease - Virus - Rice stripe virus  1
 13 Disease - Virus - Rice Yellow Mottle Virus  2
 14 Disease - Virus - Tungro virus  3
 15 Grain quality  4
 16 Grain quality - Amylose  6
 17 Grain quality - Chalk  1
 18 Grain quality - Gelatinisation temperature  1
 19 Grain quality - Grain size/shape 2
 20 Grain quality - Zinc content  1
 21 Heading date  2
 22 Yield components - Grain number  1
 23 Yield components - Grain size/shape   1
 24 Yield components - Panicle architecture  1
 25 Yield components - Photosynthesis  1

*Markers have been validated for accuracy and verified but have not been tested extensively on heterozygous material .






Below is a suggested 10-SNP Hybrid Rice panel verified* by GSL with the following information:

 SNP Panel   Gene/QTL   Chrom.   Physical position (Mb)   SNP provider ID   Trait  Favorable allele   Unfavorable allele 
 Panel 3  Rf4  10  18.8  snpOS0320  Restorer factor  C  T
 Panel 3  Rf3  1  4.94  snpOS0328  Restorer factor  G  A
 Panel 3  WA-CMS  Mt    snpOS0334  Cytoplasmic male sterility   TGTAG  -
 Panel 3  Xa23  11  23.4  snpOS0048  Bacterial leaf blight  T  C
 Panel 3  SSIIa  6  6.75  snpOS0036  Grain quality  For review  For review
 Panel 3  Pi9  6  10.3  snpOS0007b  Blast  -  CGATGGTTTC
 Panel 3  Pita  12  10.6  snpOS0006  Blast  C  A
 Panel 3  Submergence  9  6.4  snpOS0040  Submergence  T  C
 Panel 3  RTSV1  7  22.11  snpOS0050  Rice tungro spherical virus   GTGCT  ATGTT
 Panel 3  Chalk5  5  3.34  snpOS0024  Grain chalkiness  G  A

*The markers on this panel have been verified to work on a specific set of hybrid rice so results may vary